Center for Molecular Modeling - BOF J.J. Gutierrez-Sevilano BOFPDO2016000101 https://molmod.ugent.be/scientific-projects/bof-jj-gutierrez-sevilano-bofpdo2016000101 en Modeling Gas Adsorption in Flexible Metal–Organic Frameworks via Hybrid Monte Carlo / Molecular Dynamics Schemes https://molmod.ugent.be/publications/modeling-gas-adsorption-flexible-metal%E2%80%93organic-frameworks-hybrid-monte-carlo-molecular <div class="field field-name-field-a1-image field-type-image field-label-hidden"> <div class="field-items"> <div class="field-item even"><img typeof="foaf:Image" src="//molmod.ugent.be/sites/default/files/styles/large/public/TOC_4.png?itok=SONI4MFH" width="620" height="564" alt="" /></div> </div> </div> <div class="field field-name-field-a1-authors field-type-taxonomy-term-reference field-label-hidden"> <span class="field-items"> S.M.J. Rogge, R. Goeminne, R. Demuynck, J.J. Gutiérrez-Sevillano, S. Vandenbrande, L. Vanduyfhuys, M. Waroquier, T. Verstraelen, V. Van Speybroeck </span> </div> <div class="field field-name-field-journal-title field-type-taxonomy-term-reference field-label-hidden"> <span class="field-items"> Advanced Theory and Simulations </span> </div> <div class="field field-name-field-vol-iss field-type-text field-label-hidden"> <div class="field-items"> <div class="field-item even">2 (4), 1800177</div> </div> </div> <div class="field field-name-field-a1year field-type-datestamp field-label-hidden"> <div class="field-items"> <div class="field-item even"><span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2019-01-01T00:00:00+01:00">2019</span></div> </div> </div> <div class="field field-name-field-a1-type field-type-list-text field-label-hidden"> <div class="field-items"> <div class="field-item even">A1</div> </div> </div> <div class="field field-name-field-not-a-cmm-publication field-type-list-boolean field-label-hidden"> <div class="field-items"> <div class="field-item even"></div> </div> </div> <div class="field field-name-body field-type-text-with-summary field-label-above"> <h3><div class="field-label">Abstract&nbsp;</div></h3> <div class="field-items"> <div class="field-item even" property="content:encoded"><div class="tex2jax"><p>Herein, a hybrid Monte Carlo (MC)/molecular dynamics (MD) simulation protocol that properly accounts for the extraordinary structural flexibility of metal–organic frameworks (MOFs) is developed and validated. This is vital to accurately predict gas adsorption isotherms and guest‐induced flexibility of these materials. First, the performance of three recent models to predict adsorption isotherms and flexibility in MOFs is critically investigated. While these methods succeed in providing qualitative insight in the gas adsorption process in MOFs, their accuracy remains limited as the intrinsic flexibility of these materials is very hard to account for. To overcome this challenge, a hybrid MC/MD simulation protocol that is specifically designed to handle the flexibility of the adsorbent, including the shape flexibility, is introduced, thereby unifying the strengths of the previous models. It is demonstrated that the application of this new protocol to the adsorption of neon, argon, xenon, methane, and carbon dioxide in MIL‐53(Al), a prototypical flexible MOF, substantially decreases the inaccuracy of the obtained adsorption isotherms and predicted guest‐induced flexibility. As a result, this method is ideally suited to rationalize the adsorption performance of flexible nanoporous materials at the molecular level, paving the way for the conscious design of MOFs as industrial adsorbents.</p> </div></div> </div> </div> <div class="field field-name-field-open-access field-type-list-boolean field-label-hidden"> <div class="field-items"> <div class="field-item even"></div> </div> </div> <div class="field field-name-field-open-access-type field-type-list-text field-label-hidden"> <div class="field-items"> <div class="field-item even">Gold Open Access</div> </div> </div> <div class="field field-name-field-doi field-type-text field-label-above"> <h3><div class="field-label">DOI&nbsp;</div></h3> <div class="field-items"> <div class="field-item even"><div class="tex2jax"><p><a href="http://dx.doi.org/10.1002/adts.201800177">http://dx.doi.org/10.1002/adts.201800177</a></p> </div></div> </div> </div> <div class="field field-name-field-a1-file field-type-file field-label-above"> <h3><div class="field-label">Private attachment&nbsp;</div></h3> <div class="field-items"> <div class="field-item even"><span class="file"><img class="file-icon" alt="PDF icon" title="application/pdf" src="/modules/file/icons/application-pdf.png" /> <a href="https://molmod.ugent.be/system/files/main_7.pdf" type="application/pdf; length=2311013">main.pdf</a></span></div> </div> </div> Fri, 21 Dec 2018 13:00:52 +0000 sven 5263 at https://molmod.ugent.be https://molmod.ugent.be/publications/modeling-gas-adsorption-flexible-metal%E2%80%93organic-frameworks-hybrid-monte-carlo-molecular#comments Methane Adsorption in Zr-Based MOFs: Comparison and Critical Evaluation of Force Fields https://molmod.ugent.be/publications/methane-adsorption-zr-based-mofs-comparison-and-critical-evaluation-force-fields <div class="field field-name-field-a1-authors field-type-taxonomy-term-reference field-label-hidden"> <span class="field-items"> S. Vandenbrande, T. Verstraelen, J. J. Gutierrez-Sevillano, M. Waroquier, V. Van Speybroeck </span> </div> <div class="field field-name-field-journal-title field-type-taxonomy-term-reference field-label-hidden"> <span class="field-items"> Journal of Physical Chemistry C </span> </div> <div class="field field-name-field-vol-iss field-type-text field-label-hidden"> <div class="field-items"> <div class="field-item even">121 (45), 25309-25322</div> </div> </div> <div class="field field-name-field-a1year field-type-datestamp field-label-hidden"> <div class="field-items"> <div class="field-item even"><span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2017-01-01T00:00:00+01:00">2017</span></div> </div> </div> <div class="field field-name-field-a1-type field-type-list-text field-label-hidden"> <div class="field-items"> <div class="field-item even">A1</div> </div> </div> <div class="field field-name-field-not-a-cmm-publication field-type-list-boolean field-label-hidden"> <div class="field-items"> <div class="field-item even"></div> </div> </div> <div class="field field-name-body field-type-text-with-summary field-label-above"> <h3><div class="field-label">Abstract&nbsp;</div></h3> <div class="field-items"> <div class="field-item even" property="content:encoded"><div class="tex2jax"><p>The search for nanoporous materials that are highly performing for gas storage and separation is one of the contemporary challenges in material design. The computational tools to aid these experimental efforts are widely available and adsorption isotherms are routinely computed for huge sets of (hypothetical) frameworks. Clearly the computational results depend on the interactions between the adsorbed species and the adsorbent, which are commonly described using force fields. In this paper, an extensive comparison and in-depth investigation of several force fields from literature is reported for the case of methane adsorption in the Zr-based Metal-Organic Frameworks UiO-66, UiO-67, DUT-52, NU-1000 and MOF-808. Significant quantitative differences in the computed uptake are observed when comparing different force fields, but most qualitative features are common which suggests some predictive power of the simulations when it comes to these properties. More insight into to the host-guest interactions is obtained by benchmarking the force fields with an extensive number of ab initio computed single molecule interaction energies. This analysis at the molecular level reveals that especially ab initio derived force fields perform well in reproducing the ab initio interaction energies. Finally, the high sensitivity of uptake predictions on the underlying potential energy surface is explored.</p> </div></div> </div> </div> <div class="field field-name-field-open-access field-type-list-boolean field-label-hidden"> <div class="field-items"> <div class="field-item even"><img src="/sites/default/files/lock.jpg"> Open Access version available at <a href="http://biblio.ugent.be">UGent repository</a></div> </div> </div> <div class="field field-name-field-open-access-type field-type-list-text field-label-hidden"> <div class="field-items"> <div class="field-item even">Gold Open Access</div> </div> </div> <div class="field field-name-field-doi field-type-text field-label-above"> <h3><div class="field-label">DOI&nbsp;</div></h3> <div class="field-items"> <div class="field-item even"><div class="tex2jax"><p><a href="http://dx.doi.org/10.1021/acs.jpcc.7b08971">http://dx.doi.org/10.1021/acs.jpcc.7b08971</a></p> </div></div> </div> </div> <div class="field field-name-field-a1-file field-type-file field-label-above"> <h3><div class="field-label">Private attachment&nbsp;</div></h3> <div class="field-items"> <div class="field-item even"><span class="file"><img class="file-icon" alt="PDF icon" title="application/pdf" src="/modules/file/icons/application-pdf.png" /> <a href="https://molmod.ugent.be/system/files/acs.jpcc_.7b08971.pdf" type="application/pdf; length=1948697">acs.jpcc_.7b08971.pdf</a></span></div> </div> </div> Mon, 11 Sep 2017 13:28:25 +0000 michel 4888 at https://molmod.ugent.be https://molmod.ugent.be/publications/methane-adsorption-zr-based-mofs-comparison-and-critical-evaluation-force-fields#comments J.J. Gutierrez https://molmod.ugent.be/jj-gutierrez <div class="field field-name-field-author-ref field-type-taxonomy-term-reference field-label-above"> <h3 class="field-label">Project promotor</h3> <span class="field-items"> T. Verstraelen </span> </div> <div class="field field-name-field-financierende-instantie field-type-taxonomy-term-reference field-label-above"> <h3 class="field-label">Financierende instantie</h3> <span class="field-items"> BOF-postdoc </span> </div> <div class="field field-name-field-project-data field-type-datetime field-label-above"> <h3><div class="field-label">Project data&nbsp;</div></h3> <div class="field-items"> <div class="field-item even"><span class="date-display-range"><span class="date-display-start" property="dc:date" datatype="xsd:dateTime" content="2016-01-01T00:00:00+01:00">01/01/2016</span> to <span class="date-display-end" property="dc:date" datatype="xsd:dateTime" content="2018-12-31T00:00:00+01:00">31/12/2018</span></span></div> </div> </div> <div class="field field-name-field-mandaatmaanden field-type-text field-label-above"> <h3><div class="field-label">Mandaatmaanden&nbsp;</div></h3> <div class="field-items"> <div class="field-item even">36</div> </div> </div> <div class="field field-name-field-project-titel field-type-text field-label-above"> <h3><div class="field-label">Project titel&nbsp;</div></h3> <div class="field-items"> <div class="field-item even">BOF15/PDO/075</div> </div> </div> <div class="field field-name-field-a1-authors field-type-taxonomy-term-reference field-label-above"> <h3 class="field-label">Personeel</h3> <span class="field-items"> J.J. Gutiérrez-Sevillano </span> </div> <div class="field field-name-field-a1-project field-type-taxonomy-term-reference field-label-above"> <h3 class="field-label">Project ref.</h3> <span class="field-items"> <a href="/scientific-projects/bof-jj-gutierrez-sevilano-bofpdo2016000101" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">BOF J.J. Gutierrez-Sevilano BOFPDO2016000101</a> </span> </div> Wed, 29 Mar 2017 08:06:44 +0000 wim 4719 at https://molmod.ugent.be https://molmod.ugent.be/jj-gutierrez#comments 40th Iberian Adsorption Meeting https://molmod.ugent.be/travel/40th-iberian-adsorption-meeting <div class="field field-name-field-conference-location field-type-text field-label-hidden"> <div class="field-items"> <div class="field-item even">Évora, Portugal</div> </div> </div> <div class="field field-name-field-conference-dates field-type-date field-label-hidden"> <div class="field-items"> <div class="field-item even"><span class="date-display-range"><span class="date-display-start" property="dc:date" datatype="xsd:dateTime" content="2016-09-05T00:00:00+02:00">Monday, 5 September, 2016</span> to <span class="date-display-end" property="dc:date" datatype="xsd:dateTime" content="2016-09-07T00:00:00+02:00">Wednesday, 7 September, 2016</span></span></div> </div> </div> <div class="field field-name-field-a1-authors field-type-taxonomy-term-reference field-label-above"> <h3 class="field-label">Participant(s)</h3> <span class="field-items"> J.J. Gutiérrez-Sevillano </span> </div> <div class="field field-name-field-a1-project field-type-taxonomy-term-reference field-label-above"> <h3 class="field-label">Project ref.</h3> <span class="field-items"> BOF J.J. Gutierrez-Sevilano BOFPDO2016000101 </span> </div> <div class="field field-name-field-conference-reference field-type-taxonomy-term-reference field-label-above"> <h3 class="field-label">Conference reference</h3> <span class="field-items"> 40th Iberian Adsorption Meeting </span> </div> Tue, 02 Aug 2016 12:02:45 +0000 wim 4370 at https://molmod.ugent.be https://molmod.ugent.be/travel/40th-iberian-adsorption-meeting#comments Juan José Gutiérrez Sevillano https://molmod.ugent.be/members/juan-jos%C3%A9-guti%C3%A9rrez-sevillano Mon, 11 Jan 2016 09:30:27 +0000 wim 4058 at https://molmod.ugent.be https://molmod.ugent.be/members/juan-jos%C3%A9-guti%C3%A9rrez-sevillano#comments