Center for Molecular Modeling - J. Dambre https://molmod.ugent.be/publication-authors/j-dambre en Modeling Electronic Response Properties with an Explicit-Electron Machine Learning Potential https://molmod.ugent.be/publications/modeling-electronic-response-properties-explicit-electron-machine-learning-potential-1 <div class="field field-name-field-a1-authors field-type-taxonomy-term-reference field-label-hidden"> <span class="field-items"> M. Cools-Ceuppens, J. Dambre, T. Verstraelen </span> </div> <div class="field field-name-field-journal-title field-type-taxonomy-term-reference field-label-hidden"> <span class="field-items"> Journal of Chemical Theory and Computation </span> </div> <div class="field field-name-field-vol-iss field-type-text field-label-hidden"> <div class="field-items"> <div class="field-item even">18, 3, 1672-1691</div> </div> </div> <div class="field field-name-field-a1year field-type-datestamp field-label-hidden"> <div class="field-items"> <div class="field-item even"><span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2023-01-01T00:00:00+01:00">2023</span></div> </div> </div> <div class="field field-name-field-a1-type field-type-list-text field-label-hidden"> <div class="field-items"> <div class="field-item even">A1</div> </div> </div> <div class="field field-name-field-not-a-cmm-publication field-type-list-boolean field-label-hidden"> <div class="field-items"> <div class="field-item even"></div> </div> </div> <div class="field field-name-body field-type-text-with-summary field-label-above"> <h3><div class="field-label">Abstract&nbsp;</div></h3> <div class="field-items"> <div class="field-item even" property="content:encoded"><div class="tex2jax"><p> </p> <p>Explicit-electron force fields introduce electrons or electron pairs as semiclassical particles in force fields or empirical potentials, which are suitable for molecular dynamics simulations. Even though semiclassical electrons are a drastic simplification compared to a quantum-mechanical electronic wave function, they still retain a relatively detailed electronic model compared to conventional polarizable and reactive force fields. The ability of explicit-electron models to describe chemical reactions and electronic response properties has already been demonstrated, yet the description of short-range interactions for a broad range of chemical systems remains challenging. In this work, we present the electron machine learning potential (eMLP), a new explicit electron force field in which the short-range interactions are modeled with machine learning. The electron pair particles will be located at well-defined positions, derived from localized molecular orbitals or Wannier centers, naturally imposing the correct dielectric and piezoelectric behavior of the system. The eMLP is benchmarked on two newly constructed data sets: eQM7, an extension of the QM7 data set for small molecules, and a data set for the crystalline beta-glycine. It is shown that the eMLP can predict dipole moments, polarizabilities, and IR-spectra of unseen molecules with high precision. Furthermore, a variety of response properties, for example, stiffness or piezoelectric constants, can be accurately reproduced.</p> </div></div> </div> </div> <div class="field field-name-field-open-access field-type-list-boolean field-label-hidden"> <div class="field-items"> <div class="field-item even"></div> </div> </div> <div class="field field-name-field-open-access-type field-type-list-text field-label-hidden"> <div class="field-items"> <div class="field-item even">Green Open Access</div> </div> </div> <div class="field field-name-field-doi field-type-text field-label-above"> <h3><div class="field-label">DOI&nbsp;</div></h3> <div class="field-items"> <div class="field-item even"><div class="tex2jax"><p><a href="http://dx.doi.org/10.1021/acs.jctc.1c00978">http://dx.doi.org/10.1021/acs.jctc.1c00978</a></p> </div></div> </div> </div> <div class="field field-name-field-a1-file field-type-file field-label-above"> <h3><div class="field-label">Private attachment&nbsp;</div></h3> <div class="field-items"> <div class="field-item even"><span class="file"><img class="file-icon" alt="PDF icon" title="application/pdf" src="/modules/file/icons/application-pdf.png" /> <a href="https://molmod.ugent.be/system/files/acs.jctc_.1c00978_0.pdf" type="application/pdf; length=1669135">acs.jctc_.1c00978.pdf</a></span></div> </div> </div> Mon, 21 Aug 2023 09:49:07 +0000 leen 6160 at https://molmod.ugent.be https://molmod.ugent.be/publications/modeling-electronic-response-properties-explicit-electron-machine-learning-potential-1#comments Modeling electronic response properties with an explicit-electron machine learning potential https://molmod.ugent.be/publications/modeling-electronic-response-properties-explicit-electron-machine-learning-potential-0 <div class="field field-name-field-a1-authors field-type-taxonomy-term-reference field-label-hidden"> <span class="field-items"> M. Cools-Ceuppens, J. Dambre, T. Verstraelen </span> </div> <div class="field field-name-field-journal-title field-type-taxonomy-term-reference field-label-hidden"> <span class="field-items"> Journal of Chemical Theory and Computation </span> </div> <div class="field field-name-field-vol-iss field-type-text field-label-hidden"> <div class="field-items"> <div class="field-item even">Volume 18, Issue 3, Pages 1672-1691</div> </div> </div> <div class="field field-name-field-a1year field-type-datestamp field-label-hidden"> <div class="field-items"> <div class="field-item even"><span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2023-01-01T00:00:00+01:00">2023</span></div> </div> </div> <div class="field field-name-field-a1-type field-type-list-text field-label-hidden"> <div class="field-items"> <div class="field-item even">A1</div> </div> </div> <div class="field field-name-field-not-a-cmm-publication field-type-list-boolean field-label-hidden"> <div class="field-items"> <div class="field-item even"></div> </div> </div> <div class="field field-name-body field-type-text-with-summary field-label-above"> <h3><div class="field-label">Abstract&nbsp;</div></h3> <div class="field-items"> <div class="field-item even" property="content:encoded"><div class="tex2jax"><p>Explicit-electron force fields introduce electrons or electron pairs as semiclassical particles in force fields or empirical potentials, which are suitable for molecular dynamics simulations. Even though semiclassical electrons are a drastic simplification compared to a quantum-mechanical electronic wave function, they still retain a relatively detailed electronic model compared to conventional polarizable and reactive force fields. The ability of explicit-electron models to describe chemical reactions and electronic response properties has already been demonstrated, yet the description of short-range interactions for a broad range of chemical systems remains challenging. In this work, we present the electron machine learning potential (eMLP), a new explicit electron force field in which the short-range interactions are modeled with machine learning. The electron pair particles will be located at well-defined positions, derived from localized molecular orbitals or Wannier centers, naturally imposing the correct dielectric and piezoelectric behavior of the system. The eMLP is benchmarked on two newly constructed data sets: eQM7, an extension of the QM7 data set for small molecules, and a data set for the crystalline beta-glycine. It is shown that the eMLP can predict dipole moments, polarizabilities, and IR-spectra of unseen molecules with high precision. Furthermore, a variety of response properties, for example, stiffness or piezoelectric constants, can be accurately reproduced.</p> </div></div> </div> </div> <div class="field field-name-field-open-access field-type-list-boolean field-label-hidden"> <div class="field-items"> <div class="field-item even"></div> </div> </div> <div class="field field-name-field-doi field-type-text field-label-above"> <h3><div class="field-label">DOI&nbsp;</div></h3> <div class="field-items"> <div class="field-item even"><div class="tex2jax"><p><a href="https://doi.org/10.1021/acs.jctc.1c00978">https://doi.org/10.1021/acs.jctc.1c00978</a></p> </div></div> </div> </div> <div class="field field-name-field-a1-file field-type-file field-label-above"> <h3><div class="field-label">Private attachment&nbsp;</div></h3> <div class="field-items"> <div class="field-item even"><span class="file"><img class="file-icon" alt="PDF icon" title="application/pdf" src="/modules/file/icons/application-pdf.png" /> <a href="https://molmod.ugent.be/system/files/acs.jctc_.1c00978.pdf" type="application/pdf; length=1670411">acs.jctc_.1c00978.pdf</a></span></div> </div> </div> Thu, 11 May 2023 10:55:43 +0000 leen 6135 at https://molmod.ugent.be https://molmod.ugent.be/publications/modeling-electronic-response-properties-explicit-electron-machine-learning-potential-0#comments Modeling Electronic Response Properties with an Explicit-Electron Machine Learning Potential https://molmod.ugent.be/publications/modeling-electronic-response-properties-explicit-electron-machine-learning-potential <div class="field field-name-field-a1-authors field-type-taxonomy-term-reference field-label-hidden"> <span class="field-items"> M. Cools-Ceuppens, J. Dambre, T. Verstraelen </span> </div> <div class="field field-name-field-journal-title field-type-taxonomy-term-reference field-label-hidden"> <span class="field-items"> Journal of Chemical Theory and Computation (JCTC) </span> </div> <div class="field field-name-field-vol-iss field-type-text field-label-hidden"> <div class="field-items"> <div class="field-item even">18 (3), 1672–1691</div> </div> </div> <div class="field field-name-field-a1year field-type-datestamp field-label-hidden"> <div class="field-items"> <div class="field-item even"><span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2022-01-01T00:00:00+01:00">2022</span></div> </div> </div> <div class="field field-name-field-a1-type field-type-list-text field-label-hidden"> <div class="field-items"> <div class="field-item even">A1</div> </div> </div> <div class="field field-name-field-not-a-cmm-publication field-type-list-boolean field-label-hidden"> <div class="field-items"> <div class="field-item even"></div> </div> </div> <div class="field field-name-body field-type-text-with-summary field-label-above"> <h3><div class="field-label">Abstract&nbsp;</div></h3> <div class="field-items"> <div class="field-item even" property="content:encoded"><div class="tex2jax"><p>Explicit-electron force fields introduce electrons or electron pairs as semiclassical particles in force fields or empirical potentials, which are suitable for molecular dynamics simulations. Even though semiclassical electrons are a drastic simplification compared to a quantum-mechanical electronic wave function, they still retain a relatively detailed electronic model compared to conventional polarizable and reactive force fields. The ability of explicit-electron models to describe chemical reactions and electronic response properties has already been demonstrated, yet the description of short-range interactions for a broad range of chemical systems remains challenging. In this work, we present the electron machine learning potential (eMLP), a new explicit electron force field in which the short-range interactions are modeled with machine learning. The electron pair particles will be located at well-defined positions, derived from localized molecular orbitals or Wannier centers, naturally imposing the correct dielectric and piezoelectric behavior of the system. The eMLP is benchmarked on two newly constructed data sets: eQM7, an extension of the QM7 data set for small molecules, and a data set for the crystalline β-glycine. It is shown that the eMLP can predict dipole moments, polarizabilities, and IR-spectra of unseen molecules with high precision. Furthermore, a variety of response properties, for example, stiffness or piezoelectric constants, can be accurately reproduced.</p> </div></div> </div> </div> <div class="field field-name-field-open-access field-type-list-boolean field-label-hidden"> <div class="field-items"> <div class="field-item even"></div> </div> </div> <div class="field field-name-field-doi field-type-text field-label-above"> <h3><div class="field-label">DOI&nbsp;</div></h3> <div class="field-items"> <div class="field-item even"><div class="tex2jax"><p><a href="https://doi.org/10.1021/acs.jctc.1c00978">https://doi.org/10.1021/acs.jctc.1c00978</a></p> </div></div> </div> </div> <div class="field field-name-field-a1-file field-type-file field-label-above"> <h3><div class="field-label">Private attachment&nbsp;</div></h3> <div class="field-items"> <div class="field-item even"><span class="file"><img class="file-icon" alt="PDF icon" title="application/pdf" src="/modules/file/icons/application-pdf.png" /> <a href="https://molmod.ugent.be/system/files/published_4.pdf" type="application/pdf; length=1834778">published.pdf</a></span></div> </div> </div> Tue, 15 Feb 2022 09:24:18 +0000 maarten 5872 at https://molmod.ugent.be https://molmod.ugent.be/publications/modeling-electronic-response-properties-explicit-electron-machine-learning-potential#comments Explicit Electrons in Machine Learning Potentials https://molmod.ugent.be/c1_c3_publications/explicit-electrons-machine-learning-potentials <div class="field field-name-field-a1-authors field-type-taxonomy-term-reference field-label-hidden"> <span class="field-items"> <a href="/publication-authors/m-cools-ceuppens" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">M. Cools-Ceuppens</a>, <a href="/publication-authors/j-dambre" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">J. Dambre</a>, <a href="/publication-authors/t-verstraelen" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">T. Verstraelen</a> </span> </div> <div class="field field-name-field-isbn-issn field-type-text field-label-hidden"> <div class="field-items"> <div class="field-item even">ISBN/ISSN:</div> </div> </div> <div class="field field-name-field-poster-or-talk field-type-list-text field-label-hidden"> <div class="field-items"> <div class="field-item even">Invited talk</div> </div> </div> <div class="field field-name-field-conference-location field-type-text field-label-hidden"> <div class="field-items"> <div class="field-item even">Brussels, Belgium</div> </div> </div> <div class="field field-name-field-conference-dates field-type-date field-label-hidden"> <div class="field-items"> <div class="field-item even"><span class="date-display-range"><span class="date-display-start" property="dc:date" datatype="xsd:dateTime" content="2025-05-25T00:00:00+02:00">Sunday, 25 May, 2025</span> to <span class="date-display-end" property="dc:date" datatype="xsd:dateTime" content="2025-06-28T00:00:00+02:00">Saturday, 28 June, 2025</span></span></div> </div> </div> <div class="field field-name-field-conference-reference field-type-taxonomy-term-reference field-label-above"> <h3 class="field-label">Conference reference</h3> <span class="field-items"> <a href="/conferences/ml4spec25-belgian-german-we-heraeus-seminar" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">ML4SPEC25 Belgian-German WE-Heraeus Seminar:</a> </span> </div> Thu, 22 Jan 2026 11:20:36 +0000 toon 6531 at https://molmod.ugent.be https://molmod.ugent.be/c1_c3_publications/explicit-electrons-machine-learning-potentials#comments Incorporating long-range interactions and polarization in machine learning potentials with explicit electrons https://molmod.ugent.be/thesis/incorporating-long-range-interactions-and-polarization-machine-learning-potentials-explicit <div class="field field-name-field-a1-authors field-type-taxonomy-term-reference field-label-hidden"> <span class="field-items"> M. Cools-Ceuppens </span> </div> <div class="field field-name-field-thesis-date field-type-date field-label-hidden"> <div class="field-items"> <div class="field-item even"><span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2022-09-15T00:00:00+02:00">Thu, 15/09/2022</span></div> </div> </div> <div class="field field-name-field-location field-type-list-text field-label-hidden"> <div class="field-items"> <div class="field-item even">Ghent University AULA, Voldersstraat, Ghent</div> </div> </div> <div class="field field-name-field-promotoren field-type-taxonomy-term-reference field-label-inline clearfix"> <h3 class="field-label">Supervisors</h3> <span class="field-items"> <a href="/promotors/prof-dr-ir-t-verstraelen-prof-dr-ir-j-dambre" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">prof. dr. ir. T. Verstraelen; prof. dr. ir. J. Dambre</a> </span> </div> <div class="field field-name-field-private-thesis-attachment field-type-file field-label-above"> <h3><div class="field-label">Attachment (private)&nbsp;</div></h3> <div class="field-items"> <div class="field-item even"><span class="file"><img class="file-icon" alt="PDF icon" title="application/pdf" src="/modules/file/icons/application-pdf.png" /> <a href="https://molmod.ugent.be/system/files/PhD-thesis.pdf" type="application/pdf; length=13276178">PhD-thesis.pdf</a></span></div> </div> </div> Mon, 19 Sep 2022 10:40:12 +0000 leen 6042 at https://molmod.ugent.be https://molmod.ugent.be/thesis/incorporating-long-range-interactions-and-polarization-machine-learning-potentials-explicit#comments The eMLP: a novel machine learning potential to model electronic properties with explicit-electrons https://molmod.ugent.be/c1_c3_publications/emlp-novel-machine-learning-potential-model-electronic-properties-explicit <div class="field field-name-field-a1-authors field-type-taxonomy-term-reference field-label-hidden"> <span class="field-items"> <a href="/publication-authors/m-cools-ceuppens" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">M. Cools-Ceuppens</a>, <a href="/publication-authors/j-dambre" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">J. Dambre</a>, <a href="/publication-authors/t-verstraelen" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">T. Verstraelen</a> </span> </div> <div class="field field-name-field-isbn-issn field-type-text field-label-hidden"> <div class="field-items"> <div class="field-item even">ISBN/ISSN:</div> </div> </div> <div class="field field-name-field-poster-or-talk field-type-list-text field-label-hidden"> <div class="field-items"> <div class="field-item even">Talk</div> </div> </div> <div class="field field-name-field-conference-name field-type-text field-label-above"> <h3><div class="field-label">Conference / event / venue&nbsp;</div></h3> <div class="field-items"> <div class="field-item even">AutoCheMo International Reactive Force Field Workshop</div> </div> </div> <div class="field field-name-field-conference-location field-type-text field-label-hidden"> <div class="field-items"> <div class="field-item even">Ghent, Belgium</div> </div> </div> <div class="field field-name-field-conference-dates field-type-date field-label-hidden"> <div class="field-items"> <div class="field-item even"><span class="date-display-range"><span class="date-display-start" property="dc:date" datatype="xsd:dateTime" content="2021-12-08T00:00:00+01:00">Wednesday, 8 December, 2021</span> to <span class="date-display-end" property="dc:date" datatype="xsd:dateTime" content="2021-12-09T00:00:00+01:00">Thursday, 9 December, 2021</span></span></div> </div> </div> Fri, 07 Jan 2022 12:31:34 +0000 maarten 5859 at https://molmod.ugent.be https://molmod.ugent.be/c1_c3_publications/emlp-novel-machine-learning-potential-model-electronic-properties-explicit#comments Comparing different machine learning force fields: a case study of aluminium https://molmod.ugent.be/c1_c3_publications/comparing-different-machine-learning-force-fields-case-study-aluminium-0 <div class="field field-name-field-a1-authors field-type-taxonomy-term-reference field-label-hidden"> <span class="field-items"> <a href="/publication-authors/m-cools-ceuppens" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">M. Cools-Ceuppens</a>, <a href="/publication-authors/j-dambre" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">J. Dambre</a>, <a href="/publication-authors/t-verstraelen" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">T. Verstraelen</a> </span> </div> <div class="field field-name-field-isbn-issn field-type-text field-label-hidden"> <div class="field-items"> <div class="field-item even">ISBN/ISSN:</div> </div> </div> <div class="field field-name-field-poster-or-talk field-type-list-text field-label-hidden"> <div class="field-items"> <div class="field-item even">Poster</div> </div> </div> <div class="field field-name-field-conference-name field-type-text field-label-above"> <h3><div class="field-label">Conference / event / venue&nbsp;</div></h3> <div class="field-items"> <div class="field-item even">The 34th Winter School in Theoretical Chemistry: Machine Learning</div> </div> </div> <div class="field field-name-field-conference-location field-type-text field-label-hidden"> <div class="field-items"> <div class="field-item even">Helsinki, Finland</div> </div> </div> <div class="field field-name-field-conference-dates field-type-date field-label-hidden"> <div class="field-items"> <div class="field-item even"><span class="date-display-range"><span class="date-display-start" property="dc:date" datatype="xsd:dateTime" content="2018-12-10T00:00:00+01:00">Monday, 10 December, 2018</span> to <span class="date-display-end" property="dc:date" datatype="xsd:dateTime" content="2018-12-13T00:00:00+01:00">Thursday, 13 December, 2018</span></span></div> </div> </div> Mon, 06 May 2019 07:48:30 +0000 maarten 5365 at https://molmod.ugent.be https://molmod.ugent.be/c1_c3_publications/comparing-different-machine-learning-force-fields-case-study-aluminium-0#comments Comparing Different Machine Learning Force Fields: A Case Study of Aluminium https://molmod.ugent.be/c1_c3_publications/comparing-different-machine-learning-force-fields-case-study-aluminium <div class="field field-name-field-a1-authors field-type-taxonomy-term-reference field-label-hidden"> <span class="field-items"> <a href="/publication-authors/m-cools-ceuppens" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">M. Cools-Ceuppens</a>, <a href="/publication-authors/j-dambre" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">J. Dambre</a>, <a href="/publication-authors/t-verstraelen" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">T. Verstraelen</a> </span> </div> <div class="field field-name-field-isbn-issn field-type-text field-label-hidden"> <div class="field-items"> <div class="field-item even">ISBN/ISSN:</div> </div> </div> <div class="field field-name-field-poster-or-talk field-type-list-text field-label-hidden"> <div class="field-items"> <div class="field-item even">Poster</div> </div> </div> <div class="field field-name-field-conference-name field-type-text field-label-above"> <h3><div class="field-label">Conference / event / venue&nbsp;</div></h3> <div class="field-items"> <div class="field-item even">MOFSIM 2019</div> </div> </div> <div class="field field-name-field-conference-location field-type-text field-label-hidden"> <div class="field-items"> <div class="field-item even">Ghent, Belgium</div> </div> </div> <div class="field field-name-field-conference-dates field-type-date field-label-hidden"> <div class="field-items"> <div class="field-item even"><span class="date-display-range"><span class="date-display-start" property="dc:date" datatype="xsd:dateTime" content="2019-04-10T00:00:00+02:00">Wednesday, 10 April, 2019</span> to <span class="date-display-end" property="dc:date" datatype="xsd:dateTime" content="2019-04-12T00:00:00+02:00">Friday, 12 April, 2019</span></span></div> </div> </div> Mon, 06 May 2019 07:45:53 +0000 maarten 5364 at https://molmod.ugent.be https://molmod.ugent.be/c1_c3_publications/comparing-different-machine-learning-force-fields-case-study-aluminium#comments