Center for Molecular Modeling - J. Elegheert https://molmod.ugent.be/publication-authors/j-elegheert en Human IL-34 and CSF-1 Establish Structurally Similar Extracellular Assemblies with Their Common Hematopoietic Receptor https://molmod.ugent.be/publications/human-il-34-and-csf-1-establish-structurally-similar-extracellular-assemblies-their <div class="field field-name-field-a1-authors field-type-taxonomy-term-reference field-label-hidden"> <span class="field-items"> J. Felix, J. Elegheert, I. Gutsche, A. Shkumatov, Y. Wen, N. Bracke, E. Pannecoucke, I. Vandenberghe, B. Devreese, D.I. Svergun, E. Pauwels, B. Vergauwen, S.N. Savvides </span> </div> <div class="field field-name-field-journal-title field-type-taxonomy-term-reference field-label-hidden"> <span class="field-items"> Structure </span> </div> <div class="field field-name-field-vol-iss field-type-text field-label-hidden"> <div class="field-items"> <div class="field-item even">21 (4), 528-539</div> </div> </div> <div class="field field-name-field-a1year field-type-datestamp field-label-hidden"> <div class="field-items"> <div class="field-item even"><span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2013-01-01T00:00:00+01:00">2013</span></div> </div> </div> <div class="field field-name-field-a1-type field-type-list-text field-label-hidden"> <div class="field-items"> <div class="field-item even">A1</div> </div> </div> <div class="field field-name-field-not-a-cmm-publication field-type-list-boolean field-label-hidden"> <div class="field-items"> <div class="field-item even"></div> </div> </div> <div class="field field-name-body field-type-text-with-summary field-label-above"> <h3><div class="field-label">Abstract&nbsp;</div></h3> <div class="field-items"> <div class="field-item even" property="content:encoded"><div class="tex2jax"><p>The discovery that hematopoietic human colony stimulating factor-1 receptor (CSF-1R) can be activated by two distinct cognate cytokines, colony stimulating factor-1 (CSF-1) and interleukin-34 (IL-34), created puzzling scenarios for the two possible signaling complexes. We here employ a hybrid structural approach based on small-angle X-ray scattering (SAXS) and negative-stain EM to reveal that bivalent binding of human IL-34 to CSF-1R leads to an extracellular assembly hallmarked by striking similarities to the CSF-1:CSF-1R complex, including homotypic receptor-receptor interactions. Thus, IL-34 and CSF-1 have evolved to exploit the geometric requirements of CSF-1R activation. Our models include N-linked oligomannose glycans derived from a systematic approach resulting in the accurate fitting of glycosylated models to the SAXS data. We further show that the C-terminal region of IL-34 is heavily glycosylated and that it can be proteolytically cleaved from the IL-34:hCSF-1R complex, providing insights into its role in the functional nonredundancy of IL-34 and CSF-1.</p> </div></div> </div> </div> <div class="field field-name-field-open-access field-type-list-boolean field-label-hidden"> <div class="field-items"> <div class="field-item even"></div> </div> </div> <div class="field field-name-field-doi field-type-text field-label-above"> <h3><div class="field-label">DOI&nbsp;</div></h3> <div class="field-items"> <div class="field-item even"><div class="tex2jax"><p><a href="http://dx.doi.org/10.1016/j.str.2013.01.018">http://dx.doi.org/10.1016/j.str.2013.01.018</a></p> </div></div> </div> </div> <div class="field field-name-field-a1-file field-type-file field-label-above"> <h3><div class="field-label">Private attachment&nbsp;</div></h3> <div class="field-items"> <div class="field-item even"><span class="file"><img class="file-icon" alt="PDF icon" title="application/pdf" src="/modules/file/icons/application-pdf.png" /> <a href="https://molmod.ugent.be/system/files/13_Structure_21%284%29528_Felix.pdf" type="application/pdf; length=1576073">13_Structure_21(4)528_Felix.pdf</a></span></div> </div> </div> Tue, 26 Feb 2013 10:49:48 +0000 wim 2096 at https://molmod.ugent.be https://molmod.ugent.be/publications/human-il-34-and-csf-1-establish-structurally-similar-extracellular-assemblies-their#comments Study of structure-function relationships in interleukin 34, a novel cytokine https://molmod.ugent.be/c1_c3_publications/study-structure-function-relationships-interleukin-34-novel-cytokine <div class="field field-name-field-a1-authors field-type-taxonomy-term-reference field-label-hidden"> <span class="field-items"> <a href="/publication-authors/j-felix" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">J. Felix</a>, <a href="/publication-authors/j-elegheert" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">J. Elegheert</a>, <a href="/publication-authors/n-bracke" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">N. Bracke</a>, <a href="/publication-authors/shkumatov" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">A. Shkumatov</a>, <a href="/publication-authors/e-pauwels" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">E. Pauwels</a>, <a href="/publication-authors/sn-savvides" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">S.N. Savvides</a> </span> </div> <div class="field field-name-field-abstract-page field-type-text field-label-hidden"> <div class="field-items"> <div class="field-item even">p. </div> </div> </div> <div class="field field-name-field-poster-or-talk field-type-list-text field-label-hidden"> <div class="field-items"> <div class="field-item even">Poster</div> </div> </div> <div class="field field-name-field-conference-name field-type-text field-label-above"> <h3><div class="field-label">Conference / event / venue&nbsp;</div></h3> <div class="field-items"> <div class="field-item even">2nd Belgian Biophysical Society Young Scientist Day</div> </div> </div> <div class="field field-name-field-conference-location field-type-text field-label-hidden"> <div class="field-items"> <div class="field-item even">Ghent Belgium</div> </div> </div> <div class="field field-name-field-conference-dates field-type-date field-label-hidden"> <div class="field-items"> <div class="field-item even"><span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2011-05-31T00:00:00+02:00">Tuesday, 31 May, 2011</span></div> </div> </div> Mon, 27 Feb 2012 22:36:51 +0000 ewald 1114 at https://molmod.ugent.be https://molmod.ugent.be/c1_c3_publications/study-structure-function-relationships-interleukin-34-novel-cytokine#comments Molecular modeling of flavin ring plasticity: in-silico mutation of an Old Yellow Enzyme https://molmod.ugent.be/c1_c3_publications/molecular-modeling-flavin-ring-plasticity-silico-mutation-old-yellow-enzyme <div class="field field-name-field-a1-authors field-type-taxonomy-term-reference field-label-hidden"> <span class="field-items"> <a href="/publication-authors/e-pauwels" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">E. Pauwels</a>, <a href="/publication-authors/j-elegheert" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">J. Elegheert</a>, <a href="/publication-authors/m-waroquier" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">M. Waroquier</a>, <a href="/publication-authors/sn-savvides" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">S.N. Savvides</a> </span> </div> <div class="field field-name-field-poster-or-talk field-type-list-text field-label-hidden"> <div class="field-items"> <div class="field-item even">Talk</div> </div> </div> <div class="field field-name-field-conference-name field-type-text field-label-above"> <h3><div class="field-label">Conference / event / venue&nbsp;</div></h3> <div class="field-items"> <div class="field-item even">2nd Belgian Biophysical Society Young Scientist Day</div> </div> </div> <div class="field field-name-field-conference-location field-type-text field-label-hidden"> <div class="field-items"> <div class="field-item even">Ghent, Belgium</div> </div> </div> <div class="field field-name-field-conference-dates field-type-date field-label-hidden"> <div class="field-items"> <div class="field-item even"><span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2011-05-31T00:00:00+02:00">Tuesday, 31 May, 2011</span></div> </div> </div> Fri, 26 Aug 2011 13:05:22 +0000 wim 322 at https://molmod.ugent.be https://molmod.ugent.be/c1_c3_publications/molecular-modeling-flavin-ring-plasticity-silico-mutation-old-yellow-enzyme#comments