Center for Molecular Modeling - B. Schmidt https://molmod.ugent.be/publication-authors/b-schmidt en In-Depth Thermodynamic and Kinetic Analysis of Ethane Diffusion in ZIF-8 https://molmod.ugent.be/publications/depth-thermodynamic-and-kinetic-analysis-ethane-diffusion-zif-8 <div class="field field-name-field-a1-authors field-type-taxonomy-term-reference field-label-hidden"> <span class="field-items"> B. Schmidt, P. Cnudde, V. Van Speybroeck, L. Vanduyfhuys </span> </div> <div class="field field-name-field-journal-title field-type-taxonomy-term-reference field-label-hidden"> <span class="field-items"> Journal of Physical Chemistry C </span> </div> <div class="field field-name-field-vol-iss field-type-text field-label-hidden"> <div class="field-items"> <div class="field-item even">128, 43, 18509-18523</div> </div> </div> <div class="field field-name-field-a1year field-type-datestamp field-label-hidden"> <div class="field-items"> <div class="field-item even"><span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2024-01-01T00:00:00+01:00">2024</span></div> </div> </div> <div class="field field-name-field-a1-type field-type-list-text field-label-hidden"> <div class="field-items"> <div class="field-item even">A1</div> </div> </div> <div class="field field-name-field-not-a-cmm-publication field-type-list-boolean field-label-hidden"> <div class="field-items"> <div class="field-item even"></div> </div> </div> <div class="field field-name-body field-type-text-with-summary field-label-above"> <h3><div class="field-label">Abstract&nbsp;</div></h3> <div class="field-items"> <div class="field-item even" property="content:encoded"><div class="tex2jax"><p>Flexible microporous ZIF-8 crystals show excellent separation behavior of small molecules such as ethaneand ethene. As such, hydrocarbon diffusion plays an essential role in the performance of these materials, yet determining accurate diffusion constants is nontrivial. Both ab initio and force-field based molecular dynamics simulations, coupled with umbrella sampling are applied in this work to characterize the diffusion of ethane in ZIF-8. Diffusion constants are extracted from the simulations by a combination of transition state theory and a random-walk hopping model, and are compared against experimentally measured values from literature. Ethane diffusion is a hindered process characterized by a transition state corresponding to an ethane molecule crossing the gate in between two neighboring cages formed by methylimidazole linkers. Free energy profiles of the diffusion process are derived and analyzed revealing the entropic nature of the barrier due to a counteracting of covalent host deformation energy and nonbonding host–guest interaction. A temperature analysis further confirms the entropic nature of the barrier and reveals an increased gate opening at increasing temperature. Finally, the loading dependency of diffusion is investigated revealing that increasing the ethane loading of the cages slightly slows down diffusion as a result of beneficial guest–guest interactions in the cages. Our findings yield essential elementary insight into how different molecular interactions influence the diffusion path of hydrocarbons throughout ZIF-8 crystals.</p> </div></div> </div> </div> <div class="field field-name-field-open-access field-type-list-boolean field-label-hidden"> <div class="field-items"> <div class="field-item even"></div> </div> </div> <div class="field field-name-field-doi field-type-text field-label-above"> <h3><div class="field-label">DOI&nbsp;</div></h3> <div class="field-items"> <div class="field-item even"><div class="tex2jax"><p><a href="http://dx.doi.org/10.1021/acs.jpcc.4c04790">http://dx.doi.org/10.1021/acs.jpcc.4c04790</a></p> </div></div> </div> </div> <div class="field field-name-field-a1-file field-type-file field-label-above"> <h3><div class="field-label">Private attachment&nbsp;</div></h3> <div class="field-items"> <div class="field-item even"><span class="file"><img class="file-icon" alt="PDF icon" title="application/pdf" src="/modules/file/icons/application-pdf.png" /> <a href="https://molmod.ugent.be/system/files/jp4c04790_si_001.pdf" type="application/pdf; length=3627311">jp4c04790_si_001.pdf</a></span></div> <div class="field-item odd"><span class="file"><img class="file-icon" alt="PDF icon" title="application/pdf" src="/modules/file/icons/application-pdf.png" /> <a href="https://molmod.ugent.be/system/files/schmidt-et-al-2024-in-depth-thermodynamic-and-kinetic-analysis-of-ethane-diffusion-in-zif-8.pdf" type="application/pdf; length=7629372">schmidt-et-al-2024-in-depth-thermodynamic-and-kinetic-analysis-of-ethane-diffusion-in-zif-8.pdf</a></span></div> </div> </div> Thu, 24 Oct 2024 07:52:55 +0000 bernd 6333 at https://molmod.ugent.be https://molmod.ugent.be/publications/depth-thermodynamic-and-kinetic-analysis-ethane-diffusion-zif-8#comments Diffusion of light olefins through ZIF-8 unraveled by machine learning potentials https://molmod.ugent.be/c1_c3_publications/diffusion-light-olefins-through-zif-8-unraveled-machine-learning-potentials <div class="field field-name-field-a1-authors field-type-taxonomy-term-reference field-label-hidden"> <span class="field-items"> <a href="/publication-authors/b-schmidt" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">B. Schmidt</a>, <a href="/publication-authors/l-vanduyfhuys" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">L. Vanduyfhuys</a>, <a href="/publication-authors/veronique-van-speybroeck" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">Veronique Van Speybroeck</a> </span> </div> <div class="field field-name-field-isbn-issn field-type-text field-label-hidden"> <div class="field-items"> <div class="field-item even">ISBN/ISSN:</div> </div> </div> <div class="field field-name-field-poster-or-talk field-type-list-text field-label-hidden"> <div class="field-items"> <div class="field-item even">Poster</div> </div> </div> <div class="field field-name-field-conference-name field-type-text field-label-above"> <h3><div class="field-label">Conference / event / venue&nbsp;</div></h3> <div class="field-items"> <div class="field-item even">Conference Centre Leeuwenhorst in Noordwijkerhout - The Netherlands</div> </div> </div> <div class="field field-name-field-conference-location field-type-text field-label-hidden"> <div class="field-items"> <div class="field-item even">Noordwijkerhout, Netherlands</div> </div> </div> <div class="field field-name-field-conference-dates field-type-date field-label-hidden"> <div class="field-items"> <div class="field-item even"><span class="date-display-range"><span class="date-display-start" property="dc:date" datatype="xsd:dateTime" content="2025-03-10T00:00:00+01:00">Monday, 10 March, 2025</span> to <span class="date-display-end" property="dc:date" datatype="xsd:dateTime" content="2025-03-12T00:00:00+01:00">Wednesday, 12 March, 2025</span></span></div> </div> </div> <div class="field field-name-field-abstract-private field-type-file field-label-above"> <h3><div class="field-label">Abstract (private)&nbsp;</div></h3> <div class="field-items"> <div class="field-item even"><span class="file"><img class="file-icon" alt="PDF icon" title="application/pdf" src="/modules/file/icons/application-pdf.png" /> <a href="https://molmod.ugent.be/system/files/Abstract_NCCC_2025.pdf" type="application/pdf; length=342952">Abstract_NCCC_2025.pdf</a></span></div> </div> </div> Tue, 14 Oct 2025 10:53:23 +0000 bernd 6504 at https://molmod.ugent.be https://molmod.ugent.be/c1_c3_publications/diffusion-light-olefins-through-zif-8-unraveled-machine-learning-potentials#comments A molecular dynamics study on light olefin diffusion in ZIF-8 https://molmod.ugent.be/c1_c3_publications/molecular-dynamics-study-light-olefin-diffusion-zif-8 <div class="field field-name-field-a1-authors field-type-taxonomy-term-reference field-label-hidden"> <span class="field-items"> <a href="/publication-authors/b-schmidt" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">B. Schmidt</a>, <a href="/publication-authors/l-vanduyfhuys" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">L. Vanduyfhuys</a>, <a href="/publication-authors/veronique-van-speybroeck" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">Veronique Van Speybroeck</a> </span> </div> <div class="field field-name-field-isbn-issn field-type-text field-label-hidden"> <div class="field-items"> <div class="field-item even">ISBN/ISSN:</div> </div> </div> <div class="field field-name-field-poster-or-talk field-type-list-text field-label-hidden"> <div class="field-items"> <div class="field-item even">Poster</div> </div> </div> <div class="field field-name-field-conference-name field-type-text field-label-above"> <h3><div class="field-label">Conference / event / venue&nbsp;</div></h3> <div class="field-items"> <div class="field-item even">Chimie ParisTech / Université PSL</div> </div> </div> <div class="field field-name-field-conference-location field-type-text field-label-hidden"> <div class="field-items"> <div class="field-item even">Paris, France</div> </div> </div> <div class="field field-name-field-conference-dates field-type-date field-label-hidden"> <div class="field-items"> <div class="field-item even"><span class="date-display-range"><span class="date-display-start" property="dc:date" datatype="xsd:dateTime" content="2023-05-23T00:00:00+02:00">Tuesday, 23 May, 2023</span> to <span class="date-display-end" property="dc:date" datatype="xsd:dateTime" content="2023-05-24T00:00:00+02:00">Wednesday, 24 May, 2023</span></span></div> </div> </div> <div class="field field-name-field-abstract-private field-type-file field-label-above"> <h3><div class="field-label">Abstract (private)&nbsp;</div></h3> <div class="field-items"> <div class="field-item even"><span class="file"><img class="file-icon" alt="PDF icon" title="application/pdf" src="/modules/file/icons/application-pdf.png" /> <a href="https://molmod.ugent.be/system/files/Abstract_French_MOFs_2023-3.pdf" type="application/pdf; length=347795">Abstract_French_MOFs_2023-3.pdf</a></span></div> </div> </div> Tue, 14 Oct 2025 10:46:19 +0000 bernd 6503 at https://molmod.ugent.be https://molmod.ugent.be/c1_c3_publications/molecular-dynamics-study-light-olefin-diffusion-zif-8#comments Light olefin diffusion in ZIF-8: A balance between enthalpy and entropy https://molmod.ugent.be/c1_c3_publications/light-olefin-diffusion-zif-8-balance-between-enthalpy-and-entropy <div class="field field-name-field-a1-authors field-type-taxonomy-term-reference field-label-hidden"> <span class="field-items"> <a href="/publication-authors/b-schmidt" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">B. Schmidt</a>, <a href="/publication-authors/l-vanduyfhuys" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">L. Vanduyfhuys</a>, <a href="/publication-authors/veronique-van-speybroeck" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">Veronique Van Speybroeck</a> </span> </div> <div class="field field-name-field-isbn-issn field-type-text field-label-hidden"> <div class="field-items"> <div class="field-item even">ISBN/ISSN:</div> </div> </div> <div class="field field-name-field-poster-or-talk field-type-list-text field-label-hidden"> <div class="field-items"> <div class="field-item even">Poster</div> </div> </div> <div class="field field-name-field-conference-name field-type-text field-label-above"> <h3><div class="field-label">Conference / event / venue&nbsp;</div></h3> <div class="field-items"> <div class="field-item even">Granada Conference Center</div> </div> </div> <div class="field field-name-field-conference-location field-type-text field-label-hidden"> <div class="field-items"> <div class="field-item even">Granada, Spain</div> </div> </div> <div class="field field-name-field-conference-dates field-type-date field-label-hidden"> <div class="field-items"> <div class="field-item even"><span class="date-display-range"><span class="date-display-start" property="dc:date" datatype="xsd:dateTime" content="2023-09-24T00:00:00+02:00">Sunday, 24 September, 2023</span> to <span class="date-display-end" property="dc:date" datatype="xsd:dateTime" content="2023-09-27T00:00:00+02:00">Wednesday, 27 September, 2023</span></span></div> </div> </div> <div class="field field-name-field-abstract-private field-type-file field-label-above"> <h3><div class="field-label">Abstract (private)&nbsp;</div></h3> <div class="field-items"> <div class="field-item even"><span class="file"><img class="file-icon" alt="PDF icon" title="application/pdf" src="/modules/file/icons/application-pdf.png" /> <a href="https://molmod.ugent.be/system/files/EUROMOF2023_Abstract_LVDH%5B2639%5D.pdf" type="application/pdf; length=253896">EUROMOF2023_Abstract_LVDH[2639].pdf</a></span></div> </div> </div> Tue, 14 Oct 2025 10:43:06 +0000 bernd 6502 at https://molmod.ugent.be https://molmod.ugent.be/c1_c3_publications/light-olefin-diffusion-zif-8-balance-between-enthalpy-and-entropy#comments Molecular simulation of alkane and alkene diffusion in nanoporous membranes to allow for an energy-efficient separation. https://molmod.ugent.be/c1_c3_publications/molecular-simulation-alkane-and-alkene-diffusion-nanoporous-membranes-allow <div class="field field-name-field-a1-authors field-type-taxonomy-term-reference field-label-hidden"> <span class="field-items"> <a href="/publication-authors/b-schmidt" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">B. Schmidt</a>, <a href="/publication-authors/l-vanduyfhuys" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">L. Vanduyfhuys</a>, <a href="/publication-authors/v-van-speybroeck" typeof="skos:Concept" property="rdfs:label skos:prefLabel" datatype="">V. Van Speybroeck</a> </span> </div> <div class="field field-name-field-isbn-issn field-type-text field-label-hidden"> <div class="field-items"> <div class="field-item even">ISBN/ISSN:</div> </div> </div> <div class="field field-name-field-poster-or-talk field-type-list-text field-label-hidden"> <div class="field-items"> <div class="field-item even">Poster</div> </div> </div> <div class="field field-name-field-conference-name field-type-text field-label-above"> <h3><div class="field-label">Conference / event / venue&nbsp;</div></h3> <div class="field-items"> <div class="field-item even">Fears 2022</div> </div> </div> <div class="field field-name-field-conference-location field-type-text field-label-hidden"> <div class="field-items"> <div class="field-item even">Gent + Belgium</div> </div> </div> <div class="field field-name-field-conference-dates field-type-date field-label-hidden"> <div class="field-items"> <div class="field-item even"><span class="date-display-single" property="dc:date" datatype="xsd:dateTime" content="2022-10-28T00:00:00+02:00">Friday, 28 October, 2022</span></div> </div> </div> <div class="field field-name-field-abstract-private field-type-file field-label-above"> <h3><div class="field-label">Abstract (private)&nbsp;</div></h3> <div class="field-items"> <div class="field-item even"><span class="file"><img class="file-icon" alt="PDF icon" title="application/pdf" src="/modules/file/icons/application-pdf.png" /> <a href="https://molmod.ugent.be/system/files/Summary%20for%20Poster-finale.pdf" type="application/pdf; length=114529">Summary for Poster-finale.pdf</a></span></div> </div> </div> Thu, 08 Dec 2022 13:12:56 +0000 bernd 6090 at https://molmod.ugent.be https://molmod.ugent.be/c1_c3_publications/molecular-simulation-alkane-and-alkene-diffusion-nanoporous-membranes-allow#comments Machines learning MOFs: training time-lagged autoencoders to learn collective variables for accurate free energy surfaces and transition kinetics https://molmod.ugent.be/subject/machines-learning-mofs-training-time-lagged-autoencoders-learn-collective-variables-accurate Thu, 17 Mar 2022 13:35:58 +0000 leen 5911 at https://molmod.ugent.be https://molmod.ugent.be/subject/machines-learning-mofs-training-time-lagged-autoencoders-learn-collective-variables-accurate#comments Bernd Schmidt https://molmod.ugent.be/members/bernd-schmidt Tue, 26 Oct 2021 09:09:04 +0000 leen 5831 at https://molmod.ugent.be https://molmod.ugent.be/members/bernd-schmidt#comments